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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctaagttcttcattttttttccttttgcttagttaatcagtgcattgctgtggtatctctgacttacttggcgattgtagGTCAATATCGAGATTCCTTTTGCATTTAGAGTCTTCCCAGTGGGAGCAATAGAGGCGACTGGGACACAAGTTCTTGATCAAATTCTTAAACTCATGCTAC

Basic information

species Arabidopsis thaliana
transcript AT5G04440.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079894|gb|DR375651.1|DR375651
EST:     CTCAGGAGGGCTCATCAGAGCAACAAATTACTTAAGATGCAGTCATTGAG                         GTCAATATCGAGATTCCTTTTGCATTTAGAGTCTTCCCAGTGGGAGCAATA
genomic: CTCAGGAGGGCTCATCAGAGCAACAAATTACTTCAGATGCAGTCATTGAGgtagctaagt ... gcgattgtagGTCAATATCGAGATTCCTTTTGCATTTAGAGTCTTCCCAGTGGGAGCAATA
EST: gi|124866504|gb|EH950941.1|EH950941
EST:     CTCAGGAGGGCTCATCAGAGCAACAAATTACTTCAGATGCAGTCATTGAG                         GTCAATATCGAGATT
genomic: CTCAGGAGGGCTCATCAGAGCAACAAATTACTTCAGATGCAGTCATTGAGgtagctaagt ... gcgattgtagGTCAATATCGAGATT
EST: gi|19741783|gb|AU227136.1|AU227136
EST:     CTCA-GAGGCCTCATCAGAGCAACAAATTACTTCAGATGCAGTCATTGAG                         GTCAATATCGAGATTCCTTTTGCATTTAGAGTCTTCCCAGTGGGAGCAATA
genomic: CTCAGGAGGGCTCATCAGAGCAACAAATTACTTCAGATGCAGTCATTGAGgtagctaagt ... gcgattgtagGTCAATATCGAGATTCCTTTTGCATTTAGAGTCTTCCCAGTGGGAGCAATA
EST: gi|116428965|gb|EG471557.1|EG471557
EST:     CTCAGGAGGGCTCATCAGAGCAACAAATTACTTCAGATGCAGTCATTGAG                         GTCAATATCGAGATTCCTTTTGCATTTAGAGTCTTCCCAGTGGGAGCAATA
genomic: CTCAGGAGGGCTCATCAGAGCAACAAATTACTTCAGATGCAGTCATTGAGgtagctaagt ... gcgattgtagGTCAATATCGAGATTCCTTTTGCATTTAGAGTCTTCCCAGTGGGAGCAATA
EST: gi|124864551|gb|EH948988.1|EH948988
EST:     TCAGGAGGGCTCATCAGAGCAACAAATTACTTCAGATGCAGTCATTGAG                         GTCAATATCGAGATTCCTTTTGCATTTAGAGTCTTCCCAGTGGGAG
genomic: TCAGGAGGGCTCATCAGAGCAACAAATTACTTCAGATGCAGTCATTGAGgtagctaagt ... gcgattgtagGTCAATATCGAGATTCCTTTTGCATTTAGAGTCTTCCCAGTGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttagttaatcagtgcattgctgtggtatctctgacttacttggcgattgtagGTCAATATCGAGATTCCTTTTGCATTTAGAGTCTTCCCAGTGGGAGCAATAGAGGCGACTGGGACACAAGTTCTTGATCAAATTCTTAAACTCATGCTAC
                                   gacttac  putative branch site (score: 2)
     agttaat  TA-rich tract