1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctagaatatggcattgcttttatgtttttttccaaggaatactgatttcagttgtactgctgtcactaaccctcaagacatttctttctttgcaaaaagGTCATTCATTGAGGAATCTAAAGCTGGTATTAAGATATCCCCTCTGGATAATACCTTTTATGGGTTGAGCGATAGGTTAGTGACATTATCTGGGACCTTC
species | Arabidopsis thaliana |
transcript | AT5G04430.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTGGAGGTATAATCGGAAAAGGAGGGGCCACCATCAA GTCATTCATTGAGGAATCTAAAGCTGGTATTAAGATATCCCCTCTGGATAAEST: gi|47829182|gb|CK118866.1|CK118866
genomic: TTGTGGAGGTATAATCGGAAAAGGAGGGGCCACCATCAAgtaagtttcc ... ttgcaaaaagGTCATTCATTGAGGAATCTAAAGCTGGTATTAAGATATCCCCTCTGGATAA
EST: CCTAACAGTTCTTGTGGAGGTATAATTGGGAAAGGAGGGGCCACCATCAA GTCATTCATTGGAG-AATCTAAAGCTGGTATTA
genomic: CCTAACAGTTCTTGTGGAGGTATAATCGGAAAAGGAGGGGCCACCATCAAgtaagtttcc ... ttgcaaaaagGTCATTCATTG-AGGAATCTAAAGCTGGTATTA
atttcagttgtactgctgtcactaaccctcaagacatttctttctttgcaaaaagGTCATTCATTGAGGAATCTAAAGCTGGTATTAAGATATCCCCTCTGGATAATACCTTTTATGGGTTGAGCGATAGGTTAGTGACATTATCTGGGACCTTC
cactaac putative branch site (score: 1)
catttctttctttgc putative PPT
atttcttt TA-rich tract