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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgcaatcgaaatcgcactacttgttctcaaaacacggtttggtcattttggtagttgactggataaaacatatgattacagGAATCTGAGAGAGGAGTAAGCAGAGAAGAAGGGATTGCTCTAGCAAAAGAACTCAACTGCATGTTTCTTGAGTGTAGTGCTAGAACTCGACAAAACGTGG

Basic information

species Arabidopsis thaliana
transcript AT5G03530.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03530.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv08s0007g04740.t01 (Vitis vinifera), 3'ss of exon 4
---------gtgagttgcaatcgaaatcgcactacttgttctcaaaacacggtttggtcattttggtagttgactggataaaacat----atgattacagGAATCTGAGAGAGGAGTAAGCAGAGAAGAAGGGATTGCTCTAGCAAAAGAACTCAACTGCATGTTTCTTGAGTGTAGTGCTAGAACTCGACAAAACGTGG
          ||   |  | |    |  |    |  | |   |      |  |||  |  |  |  || |   ||  ||  |   |    |||||| ||||||||||| || |  |||||||||||||| || |||||||| |||||||| |     ||| | ||| |||| |||||||||| ||||||| |||| ||||
ctgtatttgatgcactaaatttatcaggggggaaaatttaagccttctgctttttaattctcattttattaatctaaattcagtctctttatgatttcagGAATCTGAAAGGGTTGTAAGCAGAGAAGAGGGTATTGCTCTTGCAAAAGAGCATGGATGCTTATTTTTTGAATGTAGTGCTAAAACTCGAGAAAATGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19799975|gb|AU231265.1|AU231265
EST:     TAAGGATGCTCGTTGGGAACAAAGTCGATAGA                         GAATCTGAGAGAGGAGTAAGCAGAGAAGAAGGGATTGCTCTAGCAAAAGAA
genomic: TAAGGATGCTCGTTGGGAACAAAGTCGATAGAgtgagttgca ... atgattacagGAATCTGAGAGAGGAGTAAGCAGAGAAGAAGGGATTGCTCTAGCAAAAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaaacacggtttggtcattttggtagttgactggataaaacatatgattacagGAATCTGAGAGAGGAGTAAGCAGAGAAGAAGGGATTGCTCTAGCAAAAGAACTCAACTGCATGTTTCTTGAGTGTAGTGCTAGAACTCGACAAAACGTGG
                          agttgac  putative branch site (score: 4)
                                    ataaaacatatgatta  TA-rich tract