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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtccttgctcatatatgattaatctgaaaacctgttggtacaactggtgataagtagtaaactagaaattcatggtctaattgtggattggtatcttctttttttttttccacatgattggtatcttactttttggtttctcatggttttccttgtttcttgttcagTCTAGTGGTAGTGGAAGTGAGAGCGGAACGCATCAAACTCAAAAGTCTGTGAAATCGAAAAGTATTAAAAAATCTGATCAAGATTCAGGAAGCAGTGATG

Basic information

species Arabidopsis thaliana
transcript AT5G02810.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164109078|gb|EL976113.1|EL976113
EST:     AAAATGAGCTTAAGATCCTTTGGCAGCATGTTTGGAGAAGATGCCAAAGT                         TCTAGTGGTAGTGGAAGTGAGAGCGGAACGCATCAAACTCAAAAG
genomic: AAAATGAGCTTAAGATCCTTTGGCAGCATGTTTGGAGAAGATGCCAAAGTgtatgtcctt ... tcttgttcagTCTAGTGGTAGTGGAAGTGAGAGCGGAACGCATCAAACTCAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgattggtatcttactttttggtttctcatggttttccttgtttcttgttcagTCTAGTGGTAGTGGAAGTGAGAGCGGAACGCATCAAACTCAAAAGTCTGTGAAATCGAAAAGTATTAAAAAATCTGATCAAGATTCAGGAAGCAGTGATG
          atcttac  putative branch site (score: 3)
                                  ttttccttgtttcttg  putative PPT
             ttacttttt  TA-rich tract