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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtactttctctcctatatttggtttcccttgctttaacgagtccactttcatcagctaacagttcatcagctatgcagtattcccaatatgattcgttgtagtatcctgttggatcatttggtgcttactcacttgtccctatattcctcagATACACTTGTCCGGCAGGCCTCAATGATTTTCAAGTGTTTTTTGTTGATGTACTACAAAAACAGTAGGGGTCGGAATTATCGTAAACAG

Basic information

species Arabidopsis thaliana
transcript AT5G01960.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01960.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv08s0056g00440.t01 (Vitis vinifera), 3'ss of exon 3
gtctgtactttctctcctatatttggtttcccttgctttaacgagtccactttcatcagctaacagttcatcagctatgcagtattcccaatatgattcgttgtagtatcctgttggatcatttggtgcttactcacttgtccctatattcctcagATACACTTGTCCGGCAGGCCTCAATGATTTTCAAGTGTTTTTTGTTGATGTACTACAAAAACAGTAGGGGTCGGAATTATCGTAAACAG
                                                      || |    |  |   ||    | | |  | ||    | || | | | ||||   |  ||||  |     | | |    |||    |      | |   ||||||||  | ||  |||||||  ||||| ||||||||||| || | |||||||||||||| ||||| || ||  | |||||||||||||||
-----------------------------------------------------aattactcgatgg---atgtaatttcctatgttaaatagataaatggatgtatgttaatgtttcactgccttgggaagtctcttaggattggttttctttcagATACTTTGGTGAGGCAGGCAGCAATGGTTTTCAAGTGTATTCTATTGATGTACTACAAGAACAGCAGAGGCAGAAATTATCGTAAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagtatcctgttggatcatttggtgcttactcacttgtccctatattcctcagATACACTTGTCCGGCAGGCCTCAATGATTTTCAAGTGTTTTTTGTTGATGTACTACAAAAACAGTAGGGGTCGGAATTATCGTAAACAG
                             tactcac  putative branch site (score: 1)
                                       tccctatattcctc  putative PPT
                                           tatatt  TA-rich tract