1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gacttcttggtacttagtttaagtcaggaaacgacctgtaattattcattggacactgatgctaatactcttttttatgtccccttctatgtgtttgcagTTATTAGATCTTCCTGGTATTATTGAGGGTGCTAAAGATGGAAAAGGTAGAGGAAGACAG
species | Arabidopsis thaliana |
transcript | AT4G39520.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTTGACATGCATTCCTGGTGTTATCACATATCGTGGAGCTAAAATCCAG TTATTAGATCTTCCTGGTATTATTGAGGGTGCTAAAGATGGAAEST: gi|47830368|gb|CK120052.1|CK120052
genomic: CTTTGACATGCATTCCTGGTGTTATCACATATCGTGGAGCTAAAATCCAGgtatggtatc ... gtgtttgcagTTATTAGATCTTCCTGGTATTATTGAGGGTGCTAAAGATGGAA
EST: CTTTGACATGCATTCCTGGTGTTATCACATATCGTGGAGCTAAAATCCAG TTATTAGATCTTCCTGGTATTATTGAGGGTGCTAAAGATGGAAAAGGTAGAEST: gi|125016993|gb|EL089262.1|EL089262
genomic: CTTTGACATGCATTCCTGGTGTTATCACATATCGTGGAGCTAAAATCCAGgtatggtatc ... gtgtttgcagTTATTAGATCTTCCTGGTATTATTGAGGGTGCTAAAGATGGAAAAGGTAGA
EST: CTTTGACATGCATTCCTGGTGTTATCACATATCGTGGAGCTAAAATCCAG TTATTAGATCTTCCTGGTATTA
genomic: CTTTGACATGCATTCCTGGTGTTATCACATATCGTGGAGCTAAAATCCAGgtatggtatc ... gtgtttgcagTTATTAGATCTTCCTGGTATTA
tcattggacactgatgctaatactcttttttatgtccccttctatgtgtttgcagTTATTAGATCTTCCTGGTATTATTGAGGGTGCTAAAGATGGAAAAGGTAGAGGAAGACAG
tgctaat putative branch site (score: 2)
taatactcttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacttcttggtacttagtttaagtcaggaaacgacctgtaattattcattggacactgatgctaatactcttttttatgtccccttctatgtgtttgcagTTATTAGATCTTCCTGGTATTATTGAGGGTGCTAAAGATGGAAAAGGTAGAGGAAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - -gaaacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgc