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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaatataccaacttaaggcagaataaacacataaacccaaagtatatgtgtcattaaggtcaaagacaaccttgtgaaatgttttgtcctaactaacagGTGAATGGAAAGCGCAGCCTGGAGGTAACTAAATCGAAGAACAAACACACTAAGCGACCAGGTTAACATAAACTTGTAAAGGCTATAGATATCTGGTTGG

Basic information

species Arabidopsis thaliana
transcript AT4G39100.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124812108|gb|EH896974.1|EH896974
EST:     AGCAGAATTTGCACAACTCTAATTCAACTTCCAATAACAGAGATGCTAAG                         GTGAATGGAAAGCGCAGCCTGGAGGTAACTAAATCGAAGAACAAACA
genomic: AGCAGAATTTGCACAACTCTAATTCAACTTCCAATAACAGAGATGCTAAGgtatttctct ... taactaacagGTGAATGGAAAGCGCAGCCTGGAGGTAACTAAATCGAAGAACAAACA
EST: gi|164057448|gb|ES153092.1|ES153092
EST:     TTTGCACAACTCTAATTCAACTTCCAATAACAGAGATGCTAAG                         GTGAATGGAAAGCGCAGCCTGGAGGTAACTAAATCGAAGAACAAACACACT
genomic: TTTGCACAACTCTAATTCAACTTCCAATAACAGAGATGCTAAGgtatttctct ... taactaacagGTGAATGGAAAGCGCAGCCTGGAGGTAACTAAATCGAAGAACAAACACACT
EST: gi|164056837|gb|ES087885.1|ES087885
EST:     CAGAATTTGCACAACTCTAATTCAACTTCCAATTAACAGAGATGCTAAG                         GTGAATGGAAAGCGCAGCCTGGAGGTAACTAAATCGAAGAACAAACACACT
genomic: CAGAATTTGCACAACTCTAATTCAACTTCCAA-TAACAGAGATGCTAAGgtatttctct ... taactaacagGTGAATGGAAAGCGCAGCCTGGAGGTAACTAAATCGAAGAACAAACACACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtgtcattaaggtcaaagacaaccttgtgaaatgttttgtcctaactaacagGTGAATGGAAAGCGCAGCCTGGAGGTAACTAAATCGAAGAACAAACACACTAAGCGACCAGGTTAACATAAACTTGTAAAGGCTATAGATATCTGGTTGG
                                          tcctaac  putative branch site (score: 1)
                                     ttttgtcct  CT-rich tract
                                aaatgtttt  TA-rich tract