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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatattagaatcataagatcatttttttcttccataattcttgtgttcgttagtctaagaaaaaaatatttgtgttttattttttgtagGTAGACTACGTTTTGGGAGATAATCCAATGAAGTTGTCATACATGATTGGGTACGGCGAGCGGTACCCGGGACTGATCCACCACCGTGGCTCGTCTATAC

Basic information

species Arabidopsis thaliana
transcript AT4G39000.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G39000.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G048165_T01 (Zea mays), 3'ss of exon 4
gtatatattagaatcataagatcatttttttcttccataattcttgtgttcgttagtctaagaaaaaaatatttgtgttttattttttgtagGTAGACTACGTTTTGGGAGATAATCCAATGAAGTTGTCATACATGATTGGGTACGGCGAGCGGTACCCGGGACTGATCCACCACCGTGGCTCGTCTATAC
                     |  | |  | | ||   || ||  |      ||   ||  ||  || || |         | | | || |||| || ||| |  | ||||| || || |||||| |||| |||||||| ||||||||||| |||||||||   | |||||||||||| | ||||||  | |
--------------------gtactgtgatacctctgaaactcccg-acagattgccctctgatgaacatttcga------actatctgcagGTCGATTACCTGCTAGGAGACAACCCGATGAAGATGTCGTACATGATCGGGTACGGCGACCGGTACCCGCAGCGGATCCACCACCGGGCCTCGTCGTTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattcttgtgttcgttagtctaagaaaaaaatatttgtgttttattttttgtagGTAGACTACGTTTTGGGAGATAATCCAATGAAGTTGTCATACATGATTGGGTACGGCGAGCGGTACCCGGGACTGATCCACCACCGTGGCTCGTCTATAC
                                        ttttatttttt  CT-rich tract
               ttagtctaagaaaaaa  TA-rich tract