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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacggcatttcctacaaaaaacactttgaacatccattgtttgtcaagaactgagatcttgagtgtaaacagtctttttttttgtttgttttagGCTTCGATCATAACCAGACTGCAGCTTTGCTTGGGGTATTTGCTACAGGAGGAGCGATAGGAACATTAATGGGAGGGATAATAGCGGATAAAATGTCGCG

Basic information

species Arabidopsis thaliana
transcript AT4G36790.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124781603|gb|EH871546.1|EH871546
EST:     TTTCCGTGGACCGCGATGGTTTTCTTTACAATGTGGTTTGAGCTTTATTG                         GCTTCGATCATAACCAGACTGCAGCTTTGCTT
genomic: TTTCCGTGGACCGCGATGGTTTTCTTTACAATGTGGTTTGAGCTT-ATTGgtaaacggca ... tttgttttagGCTTCGATCATAACCAGACTGCAGCTTTGCTT
EST: gi|124983649|gb|EL056367.1|EL056367
EST:     GGACCGCGATGGTTTTCTTTACAATGTGGTTTGAGCTTATTG                         GCTTCGATCATAACCAGACTGCAGCTTTGC
genomic: GGACCGCGATGGTTTTCTTTACAATGTGGTTTGAGCTTATTGgtaaacggca ... tttgttttagGCTTCGATCATAACCAGACTGCAGCTTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtcaagaactgagatcttgagtgtaaacagtctttttttttgtttgttttagGCTTCGATCATAACCAGACTGCAGCTTTGCTTGGGGTATTTGCTACAGGAGGAGCGATAGGAACATTAATGGGAGGGATAATAGCGGATAAAATGTCGCG
                                 tctttttttttgtttg  CT-rich tract
                                 tctttttttttgtttg  TA-rich tract