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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatatttctatatcatcaaattcaaaagctttttgtttctactctagattccactaatgtgcgttttcttgcgtgcagGGATATGTTGATTTTGGACGATTTGACCCGTTAAGCTACTTTGTTTCTAGTTCTGAAAATTTCGATTTCGTGCAA

Basic information

species Arabidopsis thaliana
transcript AT4G36440.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36440.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G05950.1 (Glycine max), 3'ss of exon 4
----------------------------gtaaaatatttctatatcatcaaattcaaaagctttttgtttctactctagattccactaatgtgcgttttcttgcgtgcagGGATATGTTGATTTTGGACGATTTGACCCGTTAAGCTACTTTGTTTCTAGTTCTGAAAATTTCGATTTCGTGCAA
                              ||   ||    || | ||   ||  || |   |||| |||| |||  |   |   || ||   |      || |    ||||||||||||||||||| ||||||||   ||| | |||||||||| || ||||||   | |  || || || |||
cctaaaatttcaatcaggtcatcgtttatcaaggcatgctcattttattggatgtaata---ttttttttccacttca---ttagctgatacccaaaactttcc----agGGATATGTTGATTTTGGCCGATTTGATAGGTTCAACTACTTTGTTGCTGGTTCTGGTCAATCTGACTTTGTACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86053041|gb|DR348798.1|DR348798
EST:     TTGATTTGGTGGTTAGATTTTGCAAGGATGTGGAAACAAGAGGGCAGGCG                         GGATATGTTGATTTTGGACGATTTGACCCGTTAAGCTACTTTGTTTCTAGT
genomic: TTGATTTGGTGGTTAGATTTTGCAAGGATGTGGAAACAAGAGGGCAGGCGgtaaaatatt ... ttgcgtgcagGGATATGTTGATTTTGGACGATTTGACCCGTTAAGCTACTTTGTTTCTAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagctttttgtttctactctagattccactaatgtgcgttttcttgcgtgcagGGATATGTTGATTTTGGACGATTTGACCCGTTAAGCTACTTTGTTTCTAGTTCTGAAAATTTCGATTTCGTGCAA
                            cactaat  putative branch site (score: 2)
                                      cgttttctt  putative PPT
      tttttgttt  TA-rich tract