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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaataagagtagatgagttcactttttgcactatatggataatcagtgtgcttacaactaggcactaggtgttttggtttctctttcatccccattaatgtattaaatctttgttaaggagcgtttacaatgtcactggtgcttcgttttaaatgttttcgtatccagCTGCTGGAGCTGGTCTCACAGGGACTAAGATGGCAAGGAGAATTGGGGACCTTGATGAGTTCGAATTTAAAGCTATTGGCGAAAATCATAATCAAGGA

Basic information

species Arabidopsis thaliana
transcript AT4G36210.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116486702|gb|EG529294.1|EG529294
EST:     TGCCGCAGGAACTGTTGCTGGCTCCGTTGCGGTTGCAGCATCGTTTGGAG                         CTGCTGGAGCTGGTCTCACAGGGACTAAGATGGCAAGGAGAATTGGGGACC
genomic: TGCCGCAGGAACTGTTGCTGGCTCCGTTGCGGTTGCAGCATCGTTTGGAGgtgaataaga ... tcgtatccagCTGCTGGAGCTGGTCTCACAGGGACTAAGATGGCAAGGAGAATTGGGGACC
EST: gi|164225097|gb|ES070125.1|ES070125
EST:     TGCAGCATCGTTTGGAG                         CTGCTGGAGCTGGTCTCACAGGGACTAAGATGGCAAGGAGAATTGGGGACC
genomic: TGCAGCATCGTTTGGAGgtgaataaga ... tcgtatccagCTGCTGGAGCTGGTCTCACAGGGACTAAGATGGCAAGGAGAATTGGGGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaggagcgtttacaatgtcactggtgcttcgttttaaatgttttcgtatccagCTGCTGGAGCTGGTCTCACAGGGACTAAGATGGCAAGGAGAATTGGGGACCTTGATGAGTTCGAATTTAAAGCTATTGGCGAAAATCATAATCAAGGA
                                        tgttttc  CT-rich tract
                                 ttttaaatgtttt  TA-rich tract