Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgtttcaagattaaactttaaatgaagacatggtgtgtttcttcatatagagtttagttgctgacagaatcgaaatttttgtgccttattgagtagATAGGTGAGTCGGCTGGACCGGAATGTAAAGCTGCACTACAAGAGACTAATAAGCTCTTGGAACTAGGGCTTAAAGTGAATAACAGGGCTGTGAAAGCTC

Basic information

species Arabidopsis thaliana
transcript AT4G36195.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124964738|gb|EL038979.1|EL038979
EST:     GTTCTGCAGTTGTTCGTGCAGTCTACGAATTCCCTGAATTTGATCAACAG                         ATAGGTGAGTCGGCTGGACCGGAATGTAAAG
genomic: GTTCTGCAGTTGTTCGTGCAGTCTACGAATTCCCTGAATTTGATCAACAGgtatttgttt ... tattgagtagATAGGTGAGTCGGCTGGACCGGAATGTAAAG
EST: gi|116406543|gb|EG449135.1|EG449135
EST:     GTTCTGCAGTTGTTCGTGCAGTCTACGAATTCCCTGAATTTGATCAACAG                         ATAGGTGAGTCGGCTGGACCGGAATGTAAAGCTGCACTACAAGAGACTAAT
genomic: GTTCTGCAGTTGTTCGTGCAGTCTACGAATTCCCTGAATTTGATCAACAGgtatttgttt ... tattgagtagATAGGTGAGTCGGCTGGACCGGAATGTAAAGCTGCACTACAAGAGACTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatatagagtttagttgctgacagaatcgaaatttttgtgccttattgagtagATAGGTGAGTCGGCTGGACCGGAATGTAAAGCTGCACTACAAGAGACTAATAAGCTCTTGGAACTAGGGCTTAAAGTGAATAACAGGGCTGTGAAAGCTC
                 tgctgac  putative branch site (score: 2)
                                          ccttatt  putative PPT
                               aaatttttgt  TA-rich tract