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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggccttgtaatgcctatactagagtaaccaggaaagcttaaggtgtttgacgtgaatgttggctttaattttcttgagtgtttatttgatttttcagGCGCATTGCATCTCATCATGGGGCCACGACTTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G35740.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35740.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA09G08180.1 (Glycine max), 3'ss of exon 5
gtaaggccttgtaatgcctatactagagtaaccaggaaagcttaaggtgtttgacgtgaatgttggctttaattttcttgagt--gtttatttgatttttcagGCGCATTGCATCTCATCATGGGGCCACGACTTCAG
               |  |   || ||   ||||    |  ||   || | ||  | |||| ||   | |  | ||  | | |    |      | |||||||||||||||||||||||| ||||| || || |||||
---------------gtgtgagctggaaagaccatttcaaatttctgtttctgctg-gaat-ttaattgttctgttaataatttcactctgcaaaattttcagGCGCATTGCATCTCATCTTGGGGTCATGATTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876818|gb|AU237649.1|AU237649
EST:     TGAGAAAACTCCATTCCAGGGGTTTGCTNAATCTTATAGCTATAGACGAN                         GCGCATTGCATCTCATCATGGGGCCACGACTTCAG
genomic: TGAGAAAACTCCATTCCAGGGGTTTGCTAAATCTTATAGCTATAGACGAGgtaaggcctt ... gatttttcagGCGCATTGCATCTCATCATGGGGCCACGACTTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtttgacgtgaatgttggctttaattttcttgagtgtttatttgatttttcagGCGCATTGCATCTCATCATGGGGCCACGACTTCAG
                                               tttttc  CT-rich tract
                                    tgtttatttgattttt  TA-rich tract