Sequence
atgc intronic sequence ATGC exonic sequencegtagtctagatagccacatcaaaattagtgaatcacagaagaaataatgcggtttatgctaattctatgttttcctgcttcctcttggaaatgcagTTCTCAGGCATCAACGGAGTTCTTTACTACACACCGCAAATCCTTGAGCAGGCGGGTGTCGGGATCCTACTATCGAACATGGGGATTAGTTCTTCCTCAG
Basic information
species | Arabidopsis thaliana |
transcript | AT4G35300.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G35300.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv03s0038g03940.t01 (Vitis vinifera), 3'ss of exon 3
-gtagtctagatagccacatca-aaattagtgaatcacagaagaaataatgcggtttatgctaattctatgttttcctgcttcct--cttggaaatgcagTTCTCAGGCATCAACGGAGTTCTTTACTACACACCGCAAATCCTTGAGCAGGCGGGTGTCGGGATCCTACTATCGAACATGGGGATTAGTTCTTCCTCAG
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aactcttctcatgatgatgggagaaaatattggataaacttaattttctgtttctttttgttggctggctgtcttcttaaattattgcttgtttatgcagTTCTCTGGCATAAATGGGGTTCTGTACTACACTCCTCAAATTCTTGAGCAGGCAGGTGTTGGAGTTATTCTTTCAAACATAGGCATTAGTTCAGCCTCTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164035195|gb|ES155203.1|ES155203EST: GCGTGCATTAGTCGTAGGAGTTGGACTTCAAATACTTCAGCAG TTCTCAGGCATCAATGGAGTTCTTTACTACACACCGCAAATCCTTGAGCAG
genomic: GCGTGCATTAGTCGTAGGAGTTGGACTTCAAATACTTCAGCAGgtagtctaga ... ggaaatgcagTTCTCAGGCATCAACGGAGTTCTTTACTACACACCGCAAATCCTTGAGCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaataatgcggtttatgctaattctatgttttcctgcttcctcttggaaatgcagTTCTCAGGCATCAACGGAGTTCTTTACTACACACCGCAAATCCTTGAGCAGGCGGGTGTCGGGATCCTACTATCGAACATGGGGATTAGTTCTTCCTCAG
tgctaat putative branch site (score: 2)
ttttcctgcttcctct putative PPT
taattctatgtttt TA-rich tract