1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gcaagttgttaccttggatttttttgtcttttgaatttcctcctcttccagagagtcatttgtgtttttgacttggtgaaacagGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGATGTCTTCTTACTTGCATTCTCACTTGTCAGCAAAGCTAGCTATGAAAATGT
species | Arabidopsis thaliana |
transcript | AT4G35020.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTGATTGTTGATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAG GGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGGTGCAGATEST: gi|86021222|gb|DR316968.1|DR316968
genomic: TGTGATTGTTGATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAGgcaagttgtt ... ggtgaaacagGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGG-TGCAGAT
EST: TGTGATTGTTGATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAG GGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGATGEST: gi|164006869|gb|EL975284.1|EL975284
genomic: TGTGATTGTTGATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAGgcaagttgtt ... ggtgaaacagGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGATG
EST: ATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAG GGCAAGAGGACTACAATAGACTAAGACCTTTGEST: gi|152035449|gb|BP853898.2|BP853898
genomic: ATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAGgcaagttgtt ... ggtgaaacagGGCAAGAGGACTACAATAGACTAAGACCTTTG
EST: TGTGATTGTTGATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAG GGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGATGEST: gi|152035392|gb|BP852535.2|BP852535
genomic: TGTGATTGTTGATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAGgcaagttgtt ... ggtgaaacagGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGATG
EST: TGTGATTGTTGATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAG GGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGATGEST: gi|86021224|gb|DR316970.1|DR316970
genomic: TGTGATTGTTGATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAGgcaagttgtt ... ggtgaaacagGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGATG
EST: TGTGATTGTTGATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAG GGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGATGEST: gi|86021223|gb|DR316969.1|DR316969
genomic: TGTGATTGTTGATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAGgcaagttgtt ... ggtgaaacagGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGATG
EST: TGTGATTGTTGATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAG GGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGATG
genomic: TGTGATTGTTGATGGCAACACTATCAACTTGGGATTGTGGGATACTGCAGgcaagttgtt ... ggtgaaacagGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGATG
tttgaatttcctcctcttccagagagtcatttgtgtttttgacttggtgaaacagGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGATGTCTTCTTACTTGCATTCTCACTTGTCAGCAAAGCTAGCTATGAAAATGT
ttttgac putative branch site (score: 3)
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagttgttaccttggatttttttgtcttttgaatttcctcctcttccagagagtcatttgtgtttttgacttggtgaaacagGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGATGTCTTCTTACTTGCATTCTCACTTGTCAGCAAAGCTAGCTATGAAAATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG