Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatatatgtgcttcaattataatagtggctttgttagaggttgttttagtagtcactcttttaagtggaagtctcatgatttgattttcttggaagaacatgtagtttaagcatttcttagtggttatatctatcatgtttttcctttattcctcctctctttgagagttgatgttgataatatttttgttatcagGCAGATCTTTTGTTGTCATATGGATATGAAGATAATCTAAGGTCGGTAACATCAATAATCCCAAGGCGTTGCCAATGCCTTCTTATGTCGGCTACCACAA

Basic information

species Arabidopsis thaliana
transcript AT4G34910.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34910.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv00s0441g00010.t01 (Vitis vinifera), 3'ss of exon 3
gtatgatatatgtgcttcaattataatagtggctttgttagaggttgttttagtagtcactcttttaagtggaagtctcatgatttgattttcttggaagaacatgtagtttaagcatttcttagtggttatatctatcatgtttttcctttattcctcctctctttgagagttgatgttgataatatttttgttatcagGCAGATCTTTTGTTGTCATATGGATATGAAGATAATCTAAGGTCGGTAACATCAATAATCCCAAGGCGTTGCCAATGCCTTCTTATGTCGGCTACCACAA
                                                                                            ||||      |||  | |||   |   ||||  |  ||   |||   ||  | || ||   ||       || ||    |  | | ||||| |  ||| |||  ||||||||||||| | ||||||||||| ||||||||| ||||||   |  | ||| |     | || || || || |||||||| |||||||| |||||  |||
--------------------------------------------------------------------------------------------cttgtg----cattaactttgtac-catctttctttttccctctgaaatactgttgctaagtttagtaattcgtttgttga-gctattgatga--tttatgtcttcagGCAGATCTTCTTTTGTCATATGGCTATGAAGATGATCTAAAAGCACTCACAGCTCATGTTCCTAGACGCTGTCAATGCCTGCTTATGTCTGCTACTTCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124786467|gb|EH876146.1|EH876146
EST:     TTCTTGATGAG                         GCAGATCTTTTGTTGTTCATATGGATATGAAGATAATCTAAGGTCGGTAAC
genomic: TTCTTGATGAGgtatgatata ... ttgttatcagGCAGATCTTTTGTTG-TCATATGGATATGAAGATAATCTAAGGTCGGTAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctttattcctcctctctttgagagttgatgttgataatatttttgttatcagGCAGATCTTTTGTTGTCATATGGATATGAAGATAATCTAAGGTCGGTAACATCAATAATCCCAAGGCGTTGCCAATGCCTTCTTATGTCGGCTACCACAA
                               tgttgat  putative branch site (score: 4)
                                          tttttgtt  putative PPT
                              atgttgataatatttt  TA-rich tract