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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttctaatatttgctatacgcacttctgttctactttatagattttttctgctcatgttgtctcacgtttattgagttactcaatttgttgatactcttatctgctttctgacaatactaattacctcatttttaacatatgcttttgtatatgaagGTATCAAGAGGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATGGCCAAGTTTATCTGCCAAGAG

Basic information

species Arabidopsis thaliana
transcript AT4G34640.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34640.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os07g10130.1 (Oryza sativa), 3'ss of exon 4
gttagttctaatatttgctatacgcacttctgttctactttatagattttttctgctcatgttgtctcacgtttattgagttactcaatttgttgatactcttatctgc-tttctgacaatact-aattacctcatttttaacatatgcttttgtatatgaagGTATCAAGAGGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATGGCCAAGTTTATCTGCCAAGAG
                                                                | | || || ||| |||   | ||||      || |||  |||   |   ||     | | || ||    |      |||| |    |    |||  || || |||||||| || || |||||||| || |||||||||||||| ||||| |||||||| ||| | |||
-------------------------------------------------------------ccctatgacattgatt-agtattttaattcagaatta-tctagtctatgtaagtggtcccattcaagtagaagaagcaatacatgtttactctgttatccagATACCAAGAGGCAATTGAAGAAATTACCAGGAGAATGGGTGCAGGAATGGCAAAGTTTATATGCAAGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125150857|gb|EL183289.1|EL183289
EST:     TTCTGCAGCTTTTTTGGAACTTGAAAAAGG                         GTATCAAGAGGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATGGC
genomic: TTCTGCAGCTTTTTTGGAACTTGAAAAAGGgttagttcta ... gtatatgaagGTATCAAGAGGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttctgacaatactaattacctcatttttaacatatgcttttgtatatgaagGTATCAAGAGGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATGGCCAAGTTTATCTGCCAAGAG
                                        cttttgt  CT-rich tract
                        tcatttttaacatat  TA-rich tract