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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttcctactctatttgaaatctaatttatatttttcagttttggccatttcccagtttttcatgttggtctgttgtttatgtcagATTGAAACTCCAATACTCTCTAGATCTACTCCAGAAGGCGCGCGAGATTATCTGGTTCCGTCAAGAATTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G33760.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33760.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA05G34820.1 (Glycine max), 3'ss of exon 4
--------------------------------------------gtgtgttcctactctatttgaaatctaatttatatttttcagttttgg--ccatttcccagtttttcatgttggtct-------gttgtttat--gtcagATTGAAACTCCAATACTCTCTAGATCTACTCCAGAAGGCGCGCGAGATTATCTGGTTCCGTCAAGAATTCAG
                                             |  ||   |    |  |||   || | | | ||||| ||| ||| ||      ||     | |    ||||| |||        ||| | ||  |  |||||||||||||||| || || ||||| || |||||||| || || |||||| | ||||| |||||||| |||
gtactatcctgtgagttcatcacttaagttatgttctcttttcattaagtaattgtgttgcttgccttccactgt-tatttctcactttggggtttggtttttgatatactgtgttgatcttaccttttttggtcataagatagATTGAAACTCCAATTCTGTCAAGATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAG

upper sequence: AT4G33760.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA08G04870.1 (Glycine max), 3'ss of exon 4
--------------------------------------------gtgtgttcctactctatttgaaatctaatttatatttttcagttttggccatttcccagtttttcatgttggtctg---ttgtttatgtc-------agATTGAAACTCCAATACTCTCTAGATCTACTCCAGAAGGCGCGCGAGATTATCTGGTTCCGTCAAGAATTCAG
                                             || ||   |    |  ||    || | | | ||||  ||| | | ||  | |      | |    ||||| |||    || |||  |||       ||||||||||||| ||||| || ||||| || |||||||| || || |||||| | ||||| |||||||| |||
gtactattctgtgagttcatcacttaagttattttctctgttcattgagtaattgtgttgctttccttccactgt-tattactcactctgggttagtgtttgatatcctgtgttgatcttacctttttttggtcccaagatagATTGAAACTCCCATACTGTCAAGATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAG

upper sequence: AT4G33760.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv03s0088g00500.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------------------------gtgtgttcctac-tctatttgaaatctaatttatatttttcagttttggccatttcccagtttttcatgttggtctgttgtttatgtcagATTGAAACTCCAATACTCTCTAGATCTACTCCAGAAGGCGCGCGAGATTATCTGGTTCCGTCAAGAATTCAG
                                                    | | ||      |  | || |||| | |||| | |   |   | ||     ||||  | | | |  || | ||   || | ||    ||||||| ||||||||||||||||||||||||||||| || || || |||||| |||| || |||||| |||||
gtattatcctttgcagttttaattacagttgaacttcttacttcaaatattatattttataggattcacttaaaatattatttgtttggatttatgtttaat-tttcatactatattttgatcgtgacttttgtagagtagATTGAGACTCCAATACTCTCTAGATCTACTCCAGAGGGTGCTCGGGATTATTTGGTGCCCTCAAGAGTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcagttttggccatttcccagtttttcatgttggtctgttgtttatgtcagATTGAAACTCCAATACTCTCTAGATCTACTCCAGAAGGCGCGCGAGATTATCTGGTTCCGTCAAGAATTCAG
                         tttttcat  TA-rich tract