1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tagtatctagaagaaatgaaatgaatttgacagatatgttatgacgtatacgccttttttaatcagtgcatattgttttctcggggtttttgttctgcagATGGGTGTGATCAAAGCTGTAAAAGATCTGATAAATGCAAAGAAAGGAGATGTGACGGCATTATGGGTGACACATAGGTTAGAGGAGCTCAAGTATGCGG
species | Arabidopsis thaliana |
transcript | AT4G33460.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
gtatacgccttttttaatcagtgcatattgttttctcggggtttttgttctgcagATGGGTGTGATCAAAGCTGTAAAAGATCTGATAAATGCAAAGAAAGGAGATGTGACGGCATTATGGGTGACACATAGGTTAGAGGAGCTCAAGTATGCGG
ttttaat putative branch site (score: 3)
tttttgttct putative PPT
ttttttaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtatctagaagaaatgaaatgaatttgacagatatgttatgacgtatacgccttttttaatcagtgcatattgttttctcggggtttttgttctgcagATGGGTGTGATCAAAGCTGTAAAAGATCTGATAAATGCAAAGAAAGGAGATGTGACGGCATTATGGGTGACACATAGGTTAGAGGAGCTCAAGTATGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - aagaaat
- - - - - - -aaatgaa