1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttacatctcataatgaattcttcttagatccttttgtgagttctgttagaaaatcttctactactcttgcctaaccaccagtgactcatgtccctttcagCGTGCTGGTGCTGTTTTCCCTCAGAGATCAGAGAGATCAGCTCCTGTGTTCACACCTCCTCAAACACAGCCTTTGACATCTTACCCTCCAAATCTTCGTA
species | Arabidopsis thaliana |
transcript | AT4G32760.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCACAATACTATGCAGGATACCAGGAATTGTTG CGTGCTGGTGCTGTTTTCCCTCAGAGATCAGAGAGATCAGCTCCTGTGTTCEST: gi|47828022|gb|CK117706.1|CK117706
genomic: CCACAATACTATGCAGGATACCAGGAATTGTTGgtatgtctac ... tccctttcagCGTGCTGGTGCTGTTTTCCCTCAGAGATCAGAGAGATCAGCTCCTGTGTTC
EST: GCCCTAGGGCAAGATATCCACAATACTATGCAGGATACCAGGAATTGTTG CGTGCTGGTGCTGTTTTCCCTCAGAGATCAGAGAGATCAGCTCCTGTGTTCEST: gi|86063775|gb|DR359532.1|DR359532
genomic: GCCCTAGGGCAAGATATCCACAATACTATGCAGGATACCAGGAATTGTTGgtatgtctac ... tccctttcagCGTGCTGGTGCTGTTTTCCCTCAGAGATCAGAGAGATCAGCTCCTGTGTTC
EST: GCCCTAGGGCAAGATATCCACAATACTATGCAGGATACCAGGAATTGTTG CGTGCTGGTGCTGTTTTCCCTCAGAGATCAGAGAGATCAGCTCCTGTGTTC
genomic: GCCCTAGGGCAAGATATCCACAATACTATGCAGGATACCAGGAATTGTTGgtatgtctac ... tccctttcagCGTGCTGGTGCTGTTTTCCCTCAGAGATCAGAGAGATCAGCTCCTGTGTTC
ttagaaaatcttctactactcttgcctaaccaccagtgactcatgtccctttcagCGTGCTGGTGCTGTTTTCCCTCAGAGATCAGAGAGATCAGCTCCTGTGTTCACACCTCCTCAAACACAGCCTTTGACATCTTACCCTCCAAATCTTCGTA
gcctaac putative branch site (score: 2)
ctcatgtccctttc putative PPT
aaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacatctcataatgaattcttcttagatccttttgtgagttctgttagaaaatcttctactactcttgcctaaccaccagtgactcatgtccctttcagCGTGCTGGTGCTGTTTTCCCTCAGAGATCAGAGAGATCAGCTCCTGTGTTCACACCTCCTCAAACACAGCCTTTGACATCTTACCCTCCAAATCTTCGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC