Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagttagactatgattcttcagatttgatctgttagtgttgatatatgtatgattccattaaacacatttgtaatgtcttttggttgcagAAATTCCGCGTTGCTCTGAAGAAGGTGTCTGATGACGCCATTCAACAAGCTAACAGGGCGGCTATTGACTCACATTTTATGCAAATGAATTCTCAGAAAG

Basic information

species Arabidopsis thaliana
transcript AT4G31920.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063782|gb|DR359539.1|DR359539
EST:     TGATGAATGTTGACAAACTCACTAGAGAGAATGTTGCAAGCCACCTTCAG                         AAATTCCGCGTTGCTTCTGAAGAAGGTGTCTGATGACGCCATTCAACAAGC
genomic: TGATGAATGTTGACAAACTCACTAGAGAGAATGTTGCAAGCCACCTTCAGgtgagagtta ... ttggttgcagAAATTCCGCGTTGCT-CTGAAGAAGGTGTCTGATGACGCCATTCAACAAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttgatatatgtatgattccattaaacacatttgtaatgtcttttggttgcagAAATTCCGCGTTGCTCTGAAGAAGGTGTCTGATGACGCCATTCAACAAGCTAACAGGGCGGCTATTGACTCACATTTTATGCAAATGAATTCTCAGAAAG
 tgttgat  putative branch site (score: 4)
                                       tgtctttt  putative PPT
      atatatgtatgatt  TA-rich tract