1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctctctgatagtagtggattcattgactaactatcaggtttgtaattgcttcgaaattttcggatccattgaattaatttgctgacttttgtgtacatagGTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGATGAAGAGCTTGAAGACGCTGATCAAGACTAACCTGTATTGAGTACTTAGAAATTGCAAGTC
species | Arabidopsis thaliana |
transcript | AT4G30220.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAATATATTGATGGACAATTGACAGGGAACCTTGGAGAGATCTTGATCAG GTGCAACAATGTTTTGTATGTCCGTGGTGTGEST: gi|164155946|gb|EL993339.1|EL993339
genomic: GAATATATTGATGGACAATTGACAGGGAACCTTGGAGAGATCTTGATCAGgtaataatat ... gtgtacatagGTGCAACAATGTTTTGTATGTCCGTGGTGTG
EST: AATATATTGATGGACAATTGTACAGGGAACCTTGGAGAGATCTTGATCAG GTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGAEST: gi|19874858|gb|AU235689.1|AU235689
genomic: AATATATTGATGGACAATTG-ACAGGGAACCTTGGAGAGATCTTGATCAGgtaataatat ... gtgtacatagGTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGA
EST: GAATATATTGATGGACAATTGACAGGGAACCTTGGAGAGATCTTGATCAG GTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGATGAAGAGCTTGAEST: gi|125224299|gb|EL238384.1|EL238384
genomic: GAATATATTGATGGACAATTGACAGGGAACCTTGGAGAGATCTTGATCAGgtaataatat ... gtgtacatagGTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGATGAAGAGCTTGA
EST: GAATATATTGATGGACAATTGACAGGGAACCTTGGAGAGATCTTGATCAG GTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGA
genomic: GAATATATTGATGGACAATTGACAGGGAACCTTGGAGAGATCTTGATCAGgtaataatat ... gtgtacatagGTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGA
ttgcttcgaaattttcggatccattgaattaatttgctgacttttgtgtacatagGTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGATGAAGAGCTTGAAGACGCTGATCAAGACTAACCTGTATTGAGTACTTAGAAATTGCAAGTC
tgctgac putative branch site (score: 2)
cttttgt CT-rich tract
attgaattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctctgatagtagtggattcattgactaactatcaggtttgtaattgcttcgaaattttcggatccattgaattaatttgctgacttttgtgtacatagGTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGATGAAGAGCTTGAAGACGCTGATCAAGACTAACCTGTATTGAGTACTTAGAAATTGCAAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT