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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacaacactctctcctttagccattagcgtttgtttattcgtctctcgttgatgaagattctggtttcgcctttttgtagATAGTAGTTCATCCTGATAGTCCTAGGGGAACGCATTTCCGTCGTGCAGGACCACGTCAAAGG

Basic information

species Arabidopsis thaliana
transcript AT4G29220.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060998|gb|DR356755.1|DR356755
EST:     GCAGTATTTTGTCGATGAGGATGACACGGTTCCTCAAAAA                         ATANGTAGTTCATCCTGAATAGTCCTAGGGGAACGCATTTCCGTCGTGCAA
genomic: GCAGTATTTTGTCGATGAGGATGACACGGTTCCTCAAAAAgtaagtacaa ... ctttttgtagATA-GTAGTTCATCCTGA-TAGTCCTAGGGGAACGCATTTCCGTCGTGCA-
EST: gi|86060992|gb|DR356749.1|DR356749
EST:     GCAGTATTTTGTCGATGAGGATGACACGGTTCCTCAAAAA                         ATAGTAGTTCATCCTGATAGT
genomic: GCAGTATTTTGTCGATGAGGATGACACGGTTCCTCAAAAAgtaagtacaa ... ctttttgtagATAGTAGTTCATCCTGATAGT
EST: gi|86060996|gb|DR356753.1|DR356753
EST:     GCAGTATTTTGTCGATGAGGATGACACGGTTCCTCAAAAA                         ATAGTAGTTCATCCTGATAGTC-TAGGGGAACGCATTTCCGTCGTGCAGG
genomic: GCAGTATTTTGTCGATGAGGATGACACGGTTCCTCAAAAAgtaagtacaa ... ctttttgtagATAGTAGTTCATCCTGATAGTCCTAGGGGAACGCATTTCCGTCGTGCAGG
EST: gi|86060995|gb|DR356752.1|DR356752
EST:     TAAGCAGTATTTTGTCGATGAGGATGACACGGTTCCTCAAAAA                         ATAGTAGTTCATCCTGATAGTCCTAGGGGAACGCATTTCCGTCGTGCAGGA
genomic: TAAGCAGTATTTTGTCGATGAGGATGACACGGTTCCTCAAAAAgtaagtacaa ... ctttttgtagATAGTAGTTCATCCTGATAGTCCTAGGGGAACGCATTTCCGTCGTGCAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcgtttgtttattcgtctctcgttgatgaagattctggtttcgcctttttgtagATAGTAGTTCATCCTGATAGTCCTAGGGGAACGCATTTCCGTCGTGCAGGACCACGTCAAAGG
                     cgttgat  putative branch site (score: 5)
                                       tttcgcctttttgt  putative PPT
     ttgtttatt  TA-rich tract