1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatatataattctactgagatggcaaatcaatgacttgttcgaaactttcttgttcattgaggttgtgggttctgtttataaaatagATACACACATCGAAGATGACTCTCTCGGAAGATGTAAACCTCGAAGAGTTTGTGATGACGAAAGACGAGTTCTCAGGAGCTGATATAAAGGCTATATGCA
species | Arabidopsis thaliana |
transcript | AT4G29040.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATCGAGTTCCCTCTCCCAGATATCAAAACAAGAAGACGTATCTTCCAG ATACACACATCGAAGATGACTCTCTCGGAAGATGTAAACCTCGAAGAGTTTEST: gi|125048107|gb|EL120376.1|EL120376
genomic: AAATCGAGTTCCCTCTCCCAGATATCAAAACAAGAAGACGTATCTTCCAGgtaatatata ... tataaaatagATACACACATCGAAGATGACTCTCTCGGAAGATGTAAACCTCGAAGAGTTT
EST: AAATCGAGTTCCCTCTCCCAGATATCAAAACAAGAAGACGTATCTTCCAG ATACACACATCGAAGATGACTCTCTCGGEST: gi|124706458|gb|EH797860.1|EH797860
genomic: AAATCGAGTTCCCTCTCCCAGATATCAAAACAAGAAGACGTATCTTCCAGgtaatatata ... tataaaatagATACACACATCGAAGATGACTCTCTCGG
EST: ATATCAAAACAAGAAGACGTATCTTCCAG ATACACACATCGAAGATGACTCTCTCGGAAGATGTAAACCTCGAAGAGTTTEST: gi|125060037|gb|EL128714.1|EL128714
genomic: ATATCAAAACAAGAAGACGTATCTTCCAGgtaatatata ... tataaaatagATACACACATCGAAGATGACTCTCTCGGAAGATGTAAACCTCGAAGAGTTT
EST: CGAGTTCCCTCTCCCAGATATCAAAACAAGAAGACGTATCTTCCAG ATACACACATCGAAGATGACTCTCTCGGAAGATGTAAACCTCGAAGAGTTT
genomic: CGAGTTCCCTCTCCCAGATATCAAAACAAGAAGACGTATCTTCCAGgtaatatata ... tataaaatagATACACACATCGAAGATGACTCTCTCGGAAGATGTAAACCTCGAAGAGTTT
gacttgttcgaaactttcttgttcattgaggttgtgggttctgtttataaaatagATACACACATCGAAGATGACTCTCTCGGAAGATGTAAACCTCGAAGAGTTTGTGATGACGAAAGACGAGTTCTCAGGAGCTGATATAAAGGCTATATGCA
ttctgttt CT-rich tract
ttctgtttataaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatataattctactgagatggcaaatcaatgacttgttcgaaactttcttgttcattgaggttgtgggttctgtttataaaatagATACACACATCGAAGATGACTCTCTCGGAAGATGTAAACCTCGAAGAGTTTGTGATGACGAAAGACGAGTTCTCAGGAGCTGATATAAAGGCTATATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT