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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttttgaaattcttcgtcttttatgtaaatgagttttcttttggttgtatagcaaataccattgctataattggtttgttttgtagGTCGAGATAGATTTCGTTCAGTGTGACATCACAAAGCTAGAGTTAAAAG

Basic information

species Arabidopsis thaliana
transcript AT4G28830.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125326364|gb|EL340444.1|EL340444
EST:     TCTCTTGAAACAGCAACACTAAATGCAGAGGAACTTGAG                         GTCGAGATAGATTTCGTTCAGTGTGACATCACAAAGCTAGAGTTAAAAGGC
genomic: TCTCTTGAAACAGCAACACTAAATGCAGAGGAACTTGAGgtttttttga ... tgttttgtagGTCGAGATAGATTTCGTTCAGTGTGACATCACAAAGCTAGAGTTAAAAGGC
EST: gi|19874619|gb|AU235450.1|AU235450
EST:     TCGACCCTGAATCTCTTGAAACAGCAACACTAAATGCAGAGGAACTTGAG                         GTCGAGATAGATTTCGTTCAGTGTGACATCACAAAGCTAGAGTTAAAAG
genomic: TCGACCCTGAATCTCTTGAAACAGCAACACTAAATGCAGAGGAACTTGAGgtttttttga ... tgttttgtagGTCGAGATAGATTTCGTTCAGTGTGACATCACAAAGCTAGAGTTAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttcttttggttgtatagcaaataccattgctataattggtttgttttgtagGTCGAGATAGATTTCGTTCAGTGTGACATCACAAAGCTAGAGTTAAAAG
                                           tttgtttt  CT-rich tract
                                  tataatt  TA-rich tract