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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacaaatgactgtgaatatatgatcatcttttttctctttcttagtaagtgaagttcttaaagatttattccgggcttctctcagGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTCAATGTTGCGCTTGACGATGTGTCCATCACAAACCTGACATTCGGGAAGG

Basic information

species Arabidopsis thaliana
transcript AT4G28510.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G28510.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA13G36940.1 (Glycine max), 3'ss of exon 4
gtatacaaatgactgtgaatatatgatcatctttt-ttctctttcttagta---agtgaagtt--------cttaaagatttattccgggctt----ctctcagGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTCAATGTTGCGCTTGACGATGTGTCCATCACAAACCTGACATTCGGGAAGG
    |  | |  |    ||| | |  | || |    |  || ||  ||| |   |||  ||||        |||||| |||||    |  |||     |   |||| || ||| |||| ||| ||||||||||||||||| | || || ||||||||| |||| ||||| |||||||| || || |  ||||| || || ||||
----attagttccatgcaatgttttcttatttcgagtattcatttctagcacacagtagagtttgtttgaacttaaacatttaacttgaccttaatctttgtagGCTGTTAGTCGGGAAATCCGGAAGATTCTGACTGAAAGGGCTGCTAACTTCAATATTGCCCTTGATGATGTGTCAATTACTAGTCTGACTTTTGGCAAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86047138|gb|DR342893.1|DR342893
EST:     AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAG                         GCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTC
genomic: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGgtatacaaat ... cttctctcagGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTC
EST: gi|86047143|gb|DR342898.1|DR342898
EST:     AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAG                         GCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTC
genomic: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGgtatacaaat ... cttctctcagGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTC
EST: gi|116467281|gb|EG509873.1|EG509873
EST:     GCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAG                         GCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTC
genomic: GCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGgtatacaaat ... cttctctcagGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTC
EST: gi|125266517|gb|EL280602.1|EL280602
EST:     AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAG                         GCGGTCAGTAGGGAGATCAGG
genomic: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGgtatacaaat ... cttctctcagGCGGTCAGTAGGGAGATCAGG
EST: gi|125246189|gb|EL260274.1|EL260274
EST:     AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAG                         GCGGTCAGTAGGGAGATCAGGAAGATTCT
genomic: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGgtatacaaat ... cttctctcagGCGGTCAGTAGGGAGATCAGGAAGATTCT
EST: gi|86047149|gb|DR342904.1|DR342904
EST:     AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCANAGAGAG                         GCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTC
genomic: AAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGgtatacaaat ... cttctctcagGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctctttcttagtaagtgaagttcttaaagatttattccgggcttctctcagGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGAGCAGCAAACTTCAATGTTGCGCTTGACGATGTGTCCATCACAAACCTGACATTCGGGAAGG
                                             cttctctc  CT-rich tract
                        ttcttaaagatttatt  TA-rich tract