1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgataagtcatagaagctttgatgcttcaagctgtgaatgtctctcgaaaaaacgaaacttgaacctagataaatgctgatggttttctgttgattcagGGACATTGTGGGGAACTATGCGGATATTGTATTTGCAAATAGCGATGAAGCAAGAGCGTTTTGTCACTTTTCCGCAGAGGAAAGTCCAATTTCAGCGACA
species | Arabidopsis thaliana |
transcript | AT4G27600.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAGCATCAGATGTGTCCTGCATAGAGAGGCATTATGATGATTTCTG GGACATTGTGGGGAACTATGCGGATATTGTATTTGCAAATAGCGATGAAGCEST: gi|125009557|gb|EL081826.1|EL081826
genomic: ACAGCATCAGATGTGTCCTGCATAGAGAGGCATTATGATGATTTCTGgtcagtttct ... gttgattcagGGACATTGTGGGGAACTATGCGGATATTGTATTTGCAAATAGCGATGAAGC
EST: TGTCCTGCATAGAGAGGCATTATGATGATTTCTG GGACATTGTGGGGAACTATGCGGATATTGTATTTGCAAATAGCGATGAAGCEST: gi|116438895|gb|EG481487.1|EG481487
genomic: TGTCCTGCATAGAGAGGCATTATGATGATTTCTGgtcagtttct ... gttgattcagGGACATTGTGGGGAACTATGCGGATATTGTATTTGCAAATAGCGATGAAGC
EST: ATAGAGAGGCATTATGATGATTTCTG GGACATTGTGGGGAACTATGCGGATATTGTATTTGCAAATAGCGATGAAGC
genomic: ATAGAGAGGCATTATGATGATTTCTGgtcagtttct ... gttgattcagGGACATTGTGGGGAACTATGCGGATATTGTATTTGCAAATAGCGATGAAGC
tcgaaaaaacgaaacttgaacctagataaatgctgatggttttctgttgattcagGGACATTGTGGGGAACTATGCGGATATTGTATTTGCAAATAGCGATGAAGCAAGAGCGTTTTGTCACTTTTCCGCAGAGGAAAGTCCAATTTCAGCGACA
ttttctgtt CT-rich tract
tagataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgataagtcatagaagctttgatgcttcaagctgtgaatgtctctcgaaaaaacgaaacttgaacctagataaatgctgatggttttctgttgattcagGGACATTGTGGGGAACTATGCGGATATTGTATTTGCAAATAGCGATGAAGCAAGAGCGTTTTGTCACTTTTCCGCAGAGGAAAGTCCAATTTCAGCGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - -catagaa
- - - - - - - - - - - - - -tcaagct
- - - - - - - - - - - - - - - - - - - - - - - - aaaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agataaa