1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgttgatctaagcagcggtttcagccttaagtatattgtctgggactaaacatgtgtcttctttagGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTGTGATAGGCCATAG
species | Arabidopsis thaliana |
transcript | AT4G26940.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCG GTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTGEST: gi|116459773|gb|EG502365.1|EG502365
genomic: TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCGgtatgttgat ... tcttctttagGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTG
EST: TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCG GTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTGEST: gi|116459771|gb|EG502363.1|EG502363
genomic: TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCGgtatgttgat ... tcttctttagGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTG
EST: TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCG GTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTGEST: gi|125079095|gb|EL141230.1|EL141230
genomic: TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCGgtatgttgat ... tcttctttagGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTG
EST: ATTCAGTCCGTGCTACTTGGATGCCTCCCG GTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTGEST: gi|125258918|gb|EL273003.1|EL273003
genomic: ATTCAGTCCGTGCTACTTGGATGCCTCCCGgtatgttgat ... tcttctttagGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTG
EST: TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCG GTGAGGAGAGAAAGAAGCTCGAGG
genomic: TAGCAGCAGAAAGCGCAGGGATTCAGTCCGTGCTACTTGGATGCCTCCCGgtatgttgat ... tcttctttagGTGAGGAGAGAAAGAAGCTCGAGG
gcagcggtttcagccttaagtatattgtctgggactaaacatgtgtcttctttagGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTGTGATAGGCCATAG
gactaaa putative branch site (score: 2)
tgtcttcttt putative PPT
ttaagtatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgatctaagcagcggtttcagccttaagtatattgtctgggactaaacatgtgtcttctttagGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAAAGGGATCGTGATGCGGTTTGTGATAGGCCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA