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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtattttacctctatgctgatttccttgtccagcctcttcagttggctgactgattgattatggatgcagCTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGACATGTGAAACATCACTGTCCAAATCTGGTATTCTCCGGATTAATGACTATTGGGAT

Basic information

species Arabidopsis thaliana
transcript AT4G26860.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164001242|gb|ES181021.1|ES181021
EST:     GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTT                         CTAAATCTGGAATCGAACCTTC
genomic: GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTTgtgagtattt ... atggatgcagCTAAATCTGGAATCGAACCTTC
EST: gi|124921134|gb|EH994781.1|EH994781
EST:     GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTT                         A
genomic: GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTTgtgagtattt ... atggatgcag-
EST: gi|124921134|gb|EH994781.1|EH994781
EST:     GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTT                         A
genomic: GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTTgtgagtattt ... atggatgcag-
EST: gi|86076079|gb|DR371836.1|DR371836
EST:     GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTT                         CTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGACATGTGA
genomic: GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTTgtgagtattt ... atggatgcagCTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGACATGTGA
EST: gi|164152674|gb|ES140960.1|ES140960
EST:     CAAGCGGAGAAGTTT                         CTAAATCTGGAATCGAACCTTCCAGCGTTCTAGAGCTAGCAAGACATGTGA
genomic: CAAGCGGAGAAGTTTgtgagtattt ... atggatgcagCTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGACATGTGA
EST: gi|116472743|gb|EG515335.1|EG515335
EST:     GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTT                         CTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGACATGTGA
genomic: GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTTgtgagtattt ... atggatgcagCTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGACATGTGA
EST: gi|86082547|gb|DR378306.1|DR378306
EST:     GAGACATCCACTAAAGGTTTTGGYCCAAGTGAACACAAGCGGAGAAGTTT                         CTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGYAAGMCATGTGA
genomic: GAGACATCCACTAAAGGTTTTGGTCCAAGTGAACACAAGCGGAGAAGTTTgtgagtattt ... atggatgcagCTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGACATGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgatttccttgtccagcctcttcagttggctgactgattgattatggatgcagCTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGACATGTGAAACATCACTGTCCAAATCTGGTATTCTCCGGATTAATGACTATTGGGAT
                                      attgattat  TA-rich tract