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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatattagttgggatatggttatgtgtggcctatgttcaaaccagaactaaaactgctttgtgtttgagcagAGTGATAGGTTACAGAAGGTGCTCGAGTTTGTGAGCACGGTGCATGATCTATGTGCCGTCCTTCGTTTAGATTTCTTAAGCACTGTCACCGAAGTTCATC

Basic information

species Arabidopsis thaliana
transcript AT4G26760.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26760.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G46450.3 (Glycine max), 3'ss of exon 4
--------------------------------gtaaaatattagttgggatatggttatgtgtggcctatgttcaaaccaga--actaaaa------ctgctttgtgtt--tgagcagAGTGATAGGTTACAGAAGGTGCTCGAGTTTGTGAGCACGGTGCATGATCTATGTGCCGTCCTTCGTTTAGATTTCTTAAGCACTGTCACCGAAGTTCATC
                                ||     |||| || ||| |     || ||      ||   |||| |||   | | | |       ||| |||  ||  |  |||||| || ||||| || ||||| || || |||||||| |||||||||||||||||||| |||||| || |||| ||||| |  ||||| || || |||||||
gtaattctgttataatgttcaataatgtgtcagtttgtcattaatttggaaaattccatttg-atttcattcacaaaacagctcattgagagttttgttgcattgccttgtttggcagAGCGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACGGTGCATGATCTATGTGCTGTCCTTGGTATAGACTTCTTCACTACTGTAACTGAGGTTCATC

upper sequence: AT4G26760.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA14G02180.3 (Glycine max), 3'ss of exon 4
-------------------------------------gtaaaatattagtt-gggatatggttatgtgtggcctatgttcaa------accagaactaaaactgctttgtgt--ttgagcagAGTGATAGGTTACAGAAGGTGCTCGAGTTTGTGAGCACGGTGCATGATCTATGTGCCGTCCTTCGTTTAGATTTCTTAAGCACTGTCACCGAAGTTCATC
                                     ||     | || || || | ||   | |   |  | | |  | ||      |     | |     ||| |||  |  ||  ||||||||| ||||| || ||||| || || |||||||| || ||||||||||||||||| |||||| || | || ||||| || ||||  || || |||||||
gtaattctgttataatgttcaataatgagtcagttcagtttgtcactactttggaaaattccttttgatttcatttactaaacagctcattgagagttttgttgcattgccttgtttggcagAGTGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACTGTGCATGATCTATGTGCTGTCCTTGGTATGGACTTCTTCAGTACTGCAACTGAGGTTCATC

upper sequence: AT4G26760.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv19s0090g01230.t01 (Vitis vinifera), 3'ss of exon 3
--------------------gtaaaatattagttgggatatggttatgtgtggcc-tatgttcaaaccagaacta--aaactgctttgtgtttgagcagAGTGATAGGTTACAGAAGGTGCTCGAGTTTGTGAGCACGGTGCATGATCTATGTGCCGTCCTTCGTTTAGATTTCTTAAGCACTGTCACCGAAGTTCATC
                      |  |||||||||  |  |   |||||   | || |||||    |  |  || |  ||     | | || |    |||||||| ||||| || ||||| || |||||||||||||| || |||||||||||||| |||||| |  | || ||||| |  ||||| || ||||||||||
gtaaaattatagatcagttcacactatattagttatgg-acttttatgctagcccatatgtcttcaggatcaccaccaattaattatttgatctgccagAGTGACAGGTTGCACAAGGTCCTTGAGTTTGTGAGCACTGTTCATGATCTATGTGCTGTCCTTGGGATGGACTTCTTTAATACTGTTACTGAAGTTCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttatgtgtggcctatgttcaaaccagaactaaaactgctttgtgtttgagcagAGTGATAGGTTACAGAAGGTGCTCGAGTTTGTGAGCACGGTGCATGATCTATGTGCCGTCCTTCGTTTAGATTTCTTAAGCACTGTCACCGAAGTTCATC
                            aactaaa  putative branch site (score: 2)
                            aactaaaa  TA-rich tract