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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcttcgacttactaatcactcctagtttactgagcctatatgccttccacttactaatcactcctagttaactgtgccaatatgcttcgtttaaagtcttttagctagttgatgaagagattgtctaacagcgtgttgtatgttggcagGGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAGTGCAGCAGCACCATCTGGTTCAGGGTTCCCTTGAAAAATTTGTTGTCATATTG

Basic information

species Arabidopsis thaliana
transcript AT4G25740.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164230430|gb|ES046615.1|ES046615
EST:     GAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAA                         GGAGGTGGTGGTAGGCCTGGTTTTG-CCGTGGTGCAGG
genomic: GAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAAgtaaatcttc ... atgttggcagGGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGG
EST: gi|124891756|gb|EH970658.1|EH970658
EST:     CTGATTTCCAGCCGTCTTTCCAA                         GGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAGTGCA
genomic: CTGATTTCCAGCCGTCTTTCCAAgtaaatcttc ... atgttggcagGGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAGTGCA
EST: gi|164192833|gb|EL981740.1|EL981740
EST:     GTGGTGATGAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAA                         GGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCG
genomic: GTGGTGATGAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAAgtaaatcttc ... atgttggcagGGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCG
EST: gi|125242262|gb|EL256347.1|EL256347
EST:     TGAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAA                         GGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAG
genomic: TGAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAAgtaaatcttc ... atgttggcagGGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcttttagctagttgatgaagagattgtctaacagcgtgttgtatgttggcagGGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAGTGCAGCAGCACCATCTGGTTCAGGGTTCCCTTGAAAAATTTGTTGTCATATTG
                            gtctaac  putative branch site (score: 2)