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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacaatcttttgcttttgtgggagcaaaacagagaacaagtctcttaaacgttacattcttgttcatttaatttgcagATGGGCTTTGGTGAAAGACAGAGAGACGGCTAGGAAAATGATAGAGTACATTGAACTCAACACGATTGGGGTTTCAAAGGACTCACAGCTTAGAGTAGCC

Basic information

species Arabidopsis thaliana
transcript AT4G24670.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124925347|gb|EL003343.1|EL003343
EST:     CTTCAAAGAGCACTGGCCATGCAGGGATACGGATTGG                         ATGGGCTTTGGTGAAAGACAGAGAGACGGCTAGGAAAATGATAGAGTACAT
genomic: CTTCAAAGAGCACTGGCCATGCAGGGATACGGATTGGgtaagtacaa ... taatttgcagATGGGCTTTGGTGAAAGACAGAGAGACGGCTAGGAAAATGATAGAGTACAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaaacagagaacaagtctcttaaacgttacattcttgttcatttaatttgcagATGGGCTTTGGTGAAAGACAGAGAGACGGCTAGGAAAATGATAGAGTACATTGAACTCAACACGATTGGGGTTTCAAAGGACTCACAGCTTAGAGTAGCC
                                          atttaat  putative branch site (score: 4)
                                       ttcattt  CT-rich tract
                                    ttgttcatttaattt  TA-rich tract