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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttttgtgtttttttcttgttttctggttgattatgtttacatgcctagagtgattgtattgtttgccatggtgcaaaatattttgttatgtaattcacctaaggttttgatctatggaacttgtaaatatcctttttccagAAGAAGAGAAAGATTTGGTTCAACCGGTGCCTTCGACTTTGCCTTCAAGTGTGACAGCACCACCAGTATCTGAACTTGATGTCACCCCTACAGCCAAGTA

Basic information

species Arabidopsis thaliana
transcript AT4G23570.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124931524|gb|EL008873.1|EL008873
EST:     CCAAATTTAAGAAGTTGATAGATGAATGCAATTTTCTAATCACAG                         AAGAAGAGAAAGATTTGGTTCAACCGGTG
genomic: CCAAATTTAAGAAGTTGATAGATGAATGCAATTTTCTAATCACAGgtatgttttt ... ctttttccagAAGAAGAGAAAGATTTGGTTCAACCGGTG
EST: gi|86073413|gb|DR369170.1|DR369170
EST:     TGAATCCAAATTTAAGAAGTTGATAGATGAATGCAATTTTCTAATCACAG                         AAGAAGAGAAAGATTTGGTTCAACCGGTGCCTTCGACTTTGCCTTCAAGTG
genomic: TGAATCCAAATTTAAGAAGTTGATAGATGAATGCAATTTTCTAATCACAGgtatgttttt ... ctttttccagAAGAAGAGAAAGATTTGGTTCAACCGGTGCCTTCGACTTTGCCTTCAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtaattcacctaaggttttgatctatggaacttgtaaatatcctttttccagAAGAAGAGAAAGATTTGGTTCAACCGGTGCCTTCGACTTTGCCTTCAAGTGTGACAGCACCACCAGTATCTGAACTTGATGTCACCCCTACAGCCAAGTA
                  ttttgat  putative branch site (score: 4)
                                         tatcctttttcc  putative PPT
                                     taaatatccttttt  TA-rich tract