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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttgcatttgatgatttgtttcattgattcgttaaccagtcctgaaacatggttagagctaactactattcatggatgttcacagATCCTGCAAAGAAAGGTCAGTTGTACTGGACACAGCGATACCATATCATTGGTGGGATTGCTAGAGGGATCCTATATCTTCATCAAGATTCACGACTCAC

Basic information

species Arabidopsis thaliana
transcript AT4G23150.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428108|gb|EG470700.1|EG470700
EST:     ATTGGTCTACGAGTATGTAGAAAATAAAAGCCTTGATAACTTCCTATTTG                         ATCCTGCAAAGAAAGGTCAGTTGTACTGGACACAGCGATACCATATCATTG
genomic: ATTGGTCTACGAGTATGTAGAAAATAAAAGCCTTGATAACTTCCTATTTGgttagttgca ... atgttcacagATCCTGCAAAGAAAGGTCAGTTGTACTGGACACAGCGATACCATATCATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaaccagtcctgaaacatggttagagctaactactattcatggatgttcacagATCCTGCAAAGAAAGGTCAGTTGTACTGGACACAGCGATACCATATCATTGGTGGGATTGCTAGAGGGATCCTATATCTTCATCAAGATTCACGACTCAC
                          agctaac  putative branch site (score: 2)
                                 tactatt  TA-rich tract