1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cagtataggatttcacataactttatgttatagagcatagtgaatggccataaacaagaaaattaagatttgtttattctgcttttcaattttctttcagGACCCAGTAAATCCAATGGCTATTCAGTGTGATGAAAAGCTCCGAGATCTTCTTGGATGTGAAAGCATTTCAGCTGTGGGGATAAATGAGATGCTGAGGC
species | Arabidopsis thaliana |
transcript | AT4G22360.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGAGATTATTCGCCGTGTTTGGGAATACATAAAACTCAACAATTTAGAG GACCCAGGAAATCCAATGGCTATTCAGTGTGATGATGAGCTCCGAGATCTTEST: gi|47830960|gb|CK120644.1|CK120644
genomic: AAGAGATTATTCGCCGTGTTTGGGAATACATAAAACTCAACAATTTAGAGgtaatgattt ... tttctttcagGACCCAGTAAATCCAATGGCTATTCAGTGTGATGAAAAGCTCCGAGATCTT
EST: AAGAGATTATTCGCCGTGTTTGGGAATACATAAAACTCAACAATTTAGAG GACCCAGTAAATCCAATGGCTATTCAGTGTGATGAAAAGCTCCGAGATCTTEST: gi|125228662|gb|EL242747.1|EL242747
genomic: AAGAGATTATTCGCCGTGTTTGGGAATACATAAAACTCAACAATTTAGAGgtaatgattt ... tttctttcagGACCCAGTAAATCCAATGGCTATTCAGTGTGATGAAAAGCTCCGAGATCTT
EST: AAGAGATTATTCGCCGTGTTTGGGAATACATAAAACTCAACAATTTAGAG GACCCAGTAAATCCAATGGCTATTCAGTGTGA
genomic: AAGAGATTATTCGCCGTGTTTGGGAATACATAAAACTCAACAATTTAGAGgtaatgattt ... tttctttcagGACCCAGTAAATCCAATGGCTATTCAGTGTGA
ggccataaacaagaaaattaagatttgtttattctgcttttcaattttctttcagGACCCAGTAAATCCAATGGCTATTCAGTGTGATGAAAAGCTCCGAGATCTTCTTGGATGTGAAAGCATTTCAGCTGTGGGGATAAATGAGATGCTGAGGC
ttctgcttttcaattt CT-rich tract
taaacaagaaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtataggatttcacataactttatgttatagagcatagtgaatggccataaacaagaaaattaagatttgtttattctgcttttcaattttctttcagGACCCAGTAAATCCAATGGCTATTCAGTGTGATGAAAAGCTCCGAGATCTTCTTGGATGTGAAAGCATTTCAGCTGTGGGGATAAATGAGATGCTGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - -cacataa
- - - - - - - - - - - - - - - - - - - - - - - - cataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa