Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttacaaaaacccgataagatagtgtatataccttcattaatagtttggtgaaatattcatctcaaatctttgtttcagGTCGAAATATGAGCACCAAGAGTTTCTGAAACCAAGCTTGCGGATCACATCCGTGAGGGGCTCTAGTACAAAGACTCCAGCATTTCTTTCATCGAGTCTA

Basic information

species Arabidopsis thaliana
transcript AT4G21160.4
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G21160.4 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G138349_T04 (Zea mays), 3'ss of exon 1
------------------------------------------------------------------------------------------------------------gtagg-----ttacaaaaacccgataag-atagtgtatataccttcattaatagtttggtgaaatattcatctcaaatctttgtttcagGTCGAAATATGAGCACCAAGAGTTTCTGAAACCAAGCTTGCGGATCA-----CATCCGTG-AGGGGCTCTAGTACAAAGACTCCAGCATTTCTTTCATCGAGTCTA
                                                                                                            | |||     |||   || | ||  |   ||| | |   |  | | | |  |    |   ||| |||  || || |    |||||||||||| ||||||||||  || || |||||||| ||||||||||| ||       |||| |   || | |||| | | | |  |   |  ||   | ||||        
gtttgtggttatctggaaacgatttttttttcccaatggacacaagaaattttgccaagttctttgaagattggtgtctacttgttttctttccaagcttgatctgcagaaggcatttttattgaagcgcgtgatccatattctccctgtcataagttgtcagctaccgaagtatgtatttcca----ttgtttcagGTCTAAATATGAGCTGCAGGAATTTCTGAAGCCAAGCTTGCGCATTGTTTCTCATCAGCCTAGTGACTCTGGAAAACATGCCGGAA-ATGCTTCTCATTCT-----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatataccttcattaatagtttggtgaaatattcatctcaaatctttgtttcagGTCGAAATATGAGCACCAAGAGTTTCTGAAACCAAGCTTGCGGATCACATCCGTGAGGGGCTCTAGTACAAAGACTCCAGCATTTCTTTCATCGAGTCTA
           cattaat  putative branch site (score: 3)
                                           tctttgtttc  putative PPT
         ttcattaatagttt  TA-rich tract