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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacattgctgattacttcgttcattagtatttcttggatttttctagcattaacattgcttgttttctgaatctgtgcgtgtcttttttgaaatcgacagCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCAATTGTGGGCATTGTCGGACGACCCTCATGTATCCTTACGGTGCATCATC

Basic information

species Arabidopsis thaliana
transcript AT4G20380.4
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830281|gb|CK119965.1|CK119965
EST:     GGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAG                         CGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA
genomic: GGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAGgtatattaat ... aaatcgacagCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA
EST: gi|86080465|gb|DR376222.1|DR376222
EST:     GGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAG                         CGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA
genomic: GGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAGgtatattaat ... aaatcgacagCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA
EST: gi|164082619|gb|ES212646.1|ES212646
EST:     GCTAGTAGCGTAAGATGCTCTTGACTGTCAAACTACGAACCTTGTGCCAG                         CGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGG
genomic: GCTAGTAGCGTAAGATGCTCTTG-CTGTCAAACTACGAACCTTGTGCCAGgtatattaat ... aaatcgacagCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGG
EST: gi|301502089|gb|HO207629.1|HO207629
EST:     GGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAG                         CGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA
genomic: GGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAGgtatattaat ... aaatcgacagCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA
EST: gi|163979936|gb|ES046045.1|ES046045
EST:     GTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAG                         CGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA
genomic: GTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAGgtatattaat ... aaatcgacagCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcattaacattgcttgttttctgaatctgtgcgtgtcttttttgaaatcgacagCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCAATTGTGGGCATTGTCGGACGACCCTCATGTATCCTTACGGTGCATCATC
  cattaac  putative branch site (score: 2)
                                      ttttttgaaat  TA-rich tract