1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctagttctttgtccatatttatccttctagaaactagcgcagaacagtattaagattattactgagtcctttttccatgttgtcctccctcctcacccagACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCTAGGCCGTTAAAAGATGTTATTGTTGTCTCCTATGAGATAATACACAAGA
species | Arabidopsis thaliana |
transcript | AT4G19600.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTGTCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGG ACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCTEST: gi|116422455|gb|EG465047.1|EG465047
genomic: TCTGTCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGGgtgagtatat ... cctcacccagACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCT
EST: TCTGTCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGG ACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCTEST: gi|164205023|gb|ES173153.1|ES173153
genomic: TCTGTCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGGgtgagtatat ... cctcacccagACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCT
EST: ATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGG ACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCT
genomic: ATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGGgtgagtatat ... cctcacccagACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCT
agtattaagattattactgagtcctttttccatgttgtcctccctcctcacccagACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCTAGGCCGTTAAAAGATGTTATTGTTGTCTCCTATGAGATAATACACAAGA
tcctcac putative branch site (score: 2)
tcctttttccatgttg CT-rich tract
taagattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagttctttgtccatatttatccttctagaaactagcgcagaacagtattaagattattactgagtcctttttccatgttgtcctccctcctcacccagACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCTAGGCCGTTAAAAGATGTTATTGTTGTCTCCTATGAGATAATACACAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - -gaaacta
- - - - - - - - - - - - - - - - - - - -cagaaca