Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcttttctttccttcacaaaatttctccaatctccattaactcttgcaaactttgacccttcaaagtggtctaaaacgtttatgacactattgcagGCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGTGATAGTTTCCGTGCTCTATTACCGATGGGAACCAAAGTAAAATGTCTTT

Basic information

species Arabidopsis thaliana
transcript AT4G19420.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86031811|gb|DR327564.1|DR327564
EST:     TAGCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAAT                         GCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGT
genomic: TAGCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAATgttagctttt ... actattgcagGCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGT
EST: gi|86031812|gb|DR327565.1|DR327565
EST:     TAGCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAAT                         GCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGT
genomic: TAGCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAATgttagctttt ... actattgcagGCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGT
EST: gi|125262057|gb|EL276142.1|EL276142
EST:     AGCCGTTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAAT                         GCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCG
genomic: AGCCG-TTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAATgttagctttt ... actattgcagGCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgcaaactttgacccttcaaagtggtctaaaacgtttatgacactattgcagGCTGTTTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGTGATAGTTTCCGTGCTCTATTACCGATGGGAACCAAAGTAAAATGTCTTT
                           gtctaaa  putative branch site (score: 3)
      aaacttt  TA-rich tract