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gtatatatggaagcttttgactaacttgttgatcaaagatgaagttaagtttttgtcttatgggtttggttggttcttcttggaaatggcagATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCATTCACAGGAGATGTAGAAGCAGTGAACCCT
species | Arabidopsis thaliana |
transcript | AT4G19420.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTG ATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCATEST: gi|86031811|gb|DR327564.1|DR327564
genomic: GAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTGgtatatatgg ... gaaatggcagATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCAT
EST: GAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTG ATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCATEST: gi|116448741|gb|EG491333.1|EG491333
genomic: GAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTGgtatatatgg ... gaaatggcagATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCAT
EST: GAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTG ATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCATEST: gi|86031812|gb|DR327565.1|DR327565
genomic: GAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTGgtatatatgg ... gaaatggcagATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCAT
EST: GAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTG ATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCAT
genomic: GAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTGgtatatatgg ... gaaatggcagATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCAT
gatgaagttaagtttttgtcttatgggtttggttggttcttcttggaaatggcagATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCATTCACAGGAGATGTAGAAGCAGTGAACCCT
ttaagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatatggaagcttttgactaacttgttgatcaaagatgaagttaagtttttgtcttatgggtttggttggttcttcttggaaatggcagATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCATTCACAGGAGATGTAGAAGCAGTGAACCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC