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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctcttcattgtttttgtttcttatggttaggtttagaccaacgcataaactgcagcctactaacctctgtgcatgtgtcttttaatgtggatataatggaaactctccagGCGCCACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTATCATACTTCTTTGGCACAGTACTAATGTGCACAACAGCTTTCTTTATGGTAA

Basic information

species Arabidopsis thaliana
transcript AT4G19185.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125244431|gb|EL258516.1|EL258516
EST:     GTATGGCTACTTTTCTTGCCATTCAG                         GCGCCACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTATCA
genomic: GTATGGCTACTTTTCTTGCCATTCAGgtaaatctct ... aactctccagGCGCCACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTATCA
EST: gi|86080009|gb|DR375766.1|DR375766
EST:     GAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAG                         GCGCCACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTATCA
genomic: GAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGgtaaatctct ... aactctccagGCGCCACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctactaacctctgtgcatgtgtcttttaatgtggatataatggaaactctccagGCGCCACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTATCATACTTCTTTGGCACAGTACTAATGTGCACAACAGCTTTCTTTATGGTAA
                                               ctctcc  CT-rich tract
                      tcttttaat  TA-rich tract