1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgttgtttgttacatttcaagttatatatataatatatgtaaattaacttatgtttggttgcatatctttcttgagtaatcatttgacattgtttttttctgtttgattcaccagtaagtttttgtgttgaatgttgatattgtagCAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAATGACTCTGCTGGGTCTGGACAGAAAGCACTTAATCTTGTTCGAATG
species | Arabidopsis thaliana |
transcript | AT4G18975.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAG CAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAAEST: gi|116392998|gb|EG435590.1|EG435590
genomic: GAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAGgtttgttgtt ... gatattgtagCAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAA
EST: GAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAG CAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAAEST: gi|116393001|gb|EG435593.1|EG435593
genomic: GAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAGgtttgttgtt ... gatattgtagCAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAA
EST: GAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAG CAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAAEST: gi|116392999|gb|EG435591.1|EG435591
genomic: GAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAGgtttgttgtt ... gatattgtagCAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAA
EST: GAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAG CAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAA
genomic: GAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAGgtttgttgtt ... gatattgtagCAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAA
gtttttttctgtttgattcaccagtaagtttttgtgttgaatgttgatattgtagCAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAATGACTCTGCTGGGTCTGGACAGAAAGCACTTAATCTTGTTCGAATG
tgttgat putative branch site (score: 4)
taagttttt TA-rich tract