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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaatatcctgtagacggttctaacttctaaggttttggattccaattccttaccataatctttttgtatgtgcgtgtagGAGGAAGTTCCATGATGAGCTTGCATTGCTCCAAAGGCTTAGGCATCCAAACATTGTGCAGTTTCTTGGTGCTGTAACCCAAAGTAACCCAATGATGATT

Basic information

species Arabidopsis thaliana
transcript AT4G18950.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G18950.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv10s0003g02060.t01 (Vitis vinifera), 3'ss of exon 4
--------------------gtaagtaaatatcctgtagacggttctaacttctaaggttttggattccaattccttaccataatctttttgtatgtgcgtgtagGAGGAAGTTCCATGATGAGCTTGCATTGCTCCAAAGGCTTAGGCATCCAAACATTGTGCAGTTTCTTGGTGCTGTAACCCAAAGTAACCCAATGATGATT
                     | |||    ||  |       |  || | ||||  | |  | |||| |  ||    | |  ||   | |||  | |||    |||| |   ||    ||||||||||||||||| || | | |  | ||||| ||  | || |||||||| ||||||||||| |||||||  ||||||||||||
gtgggttttcaatactagcaatgagttttgatttttatttgtggccttatttct--gctggtagattgcttttatccatctgaaagctgttggttttgcac--agGAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAATGTAGTCCAGTTTCTGGGTGCTGTAACTCAAAGTAGTCCAATGATGATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125264559|gb|EL278644.1|EL278644
EST:     CTGGATGATGAAGTTTTGAGCGANGACGATCAAGT                         GAGGAAGTTCCATGATGAGCTTGCATTGCTCCAAAGGCTTAGGCATCCAAA
genomic: CTGGATGATGAAGTTTTGAGCGATGACGATCAAGTgtaagtaaat ... gtgcgtgtagGAGGAAGTTCCATGATGAGCTTGCATTGCTCCAAAGGCTTAGGCATCCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaaggttttggattccaattccttaccataatctttttgtatgtgcgtgtagGAGGAAGTTCCATGATGAGCTTGCATTGCTCCAAAGGCTTAGGCATCCAAACATTGTGCAGTTTCTTGGTGCTGTAACCCAAAGTAACCCAATGATGATT
                      tccttac  putative branch site (score: 2)
                              ataatctttttgtat  TA-rich tract