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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttgccttctaatagtcttcaattgttttgtttctctttctgttttaggtatgtgaagtttttcgtggttttgatattgttttgacagGGTGCACTAGCTGATATATTCCTAAGGGGCACAGATCTTATCTCGGATTCTCGAGGAATGGTTGCTTTG

Basic information

species Arabidopsis thaliana
transcript AT4G17840.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444842|gb|EG487434.1|EG487434
EST:     TTACTGCAAGTTCAGTTGGAGAAGAGCTCTTCTATCGTGCTGCGTTTCAG                         GGTGCACTAGCTGATATATTCCTAAGGGGCACAGATCTTATCTCGGATTCT
genomic: TTACTGCAAGTTCAGTTGGAGAAGAGCTCTTCTATCGTGCTGCGTTTCAGgtttttgcct ... gttttgacagGGTGCACTAGCTGATATATTCCTAAGGGGCACAGATCTTATCTCGGATTCT
EST: gi|116444840|gb|EG487432.1|EG487432
EST:     TTACTGCAAGTTCAGTTGGAGAAGAGCTCTTCTATCGTGCTGCGTTTCAG                         GGTGCACTAGCTGATATATTCCTAAGGGGCACAGATCTTATCTCGGATTCT
genomic: TTACTGCAAGTTCAGTTGGAGAAGAGCTCTTCTATCGTGCTGCGTTTCAGgtttttgcct ... gttttgacagGGTGCACTAGCTGATATATTCCTAAGGGGCACAGATCTTATCTCGGATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctttctgttttaggtatgtgaagtttttcgtggttttgatattgttttgacagGGTGCACTAGCTGATATATTCCTAAGGGGCACAGATCTTATCTCGGATTCTCGAGGAATGGTTGCTTTG
                                   ttttgat  putative branch site (score: 4)
                                           ttgtttt  CT-rich tract
                                   ttttgatattgtttt  TA-rich tract