Sequence
atgc intronic sequence ATGC exonic sequencegtgtgttttcgggtcttactttctcaaggttcttcgtcttttccttatctaaattttttcttcttaaacttaagctagAAGGATGATCTCAAGACTGTGGTATCTTACCTGAGAAACAGCAATCAAGTATCCCGTATTGGACTTTGGGGACGATCTATGGGTGCAGTTACCAG
Basic information
species | Arabidopsis thaliana |
transcript | AT4G17150.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA09G02050.1 (Glycine max), 3'ss of exon 5
---------------------------------------------------------------------------------------------gtgtgttttcgggtct-tactttctcaaggttcttcgtcttttccttatctaaattttttcttcttaaa-----cttaagctagAAGGATGATCTCAAGACTGTGGTATCTTACCTGAGAAACAGCAATCAAGTATCCCGTATTGGACTTTGGGGACGATCTATGGGTGCAGTTACCAG
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gtaagctacccctttttgcatgtatttatttctttaatcagtttccacaattgcatcttttatgcatctaactaaagtttctgtatgaaattaacgatgcagcacatctataaagttgcatgcttttttgtgtaattttcctgcaatgtttctcaagtttaatgtttcctgtgacagAAAGATGATCTCAAGATGGTGGTGTCACATTTAAGAAGCAACAAACAAGTATCTCGTATAGGACTTTGGGGACGATCAATGGGTGCTGTTACAAG
upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA17G00770.1 (Glycine max), 3'ss of exon 5
-----------------------------------gtgtgttttcgggtcttacttt----ctcaaggttcttcgtcttttccttatcta---aattttttcttcttaaacttaagctagAAGGATGATCTCAAGACTGTGGTATCTTACCTGAGAAACAGCAATCAAGTATCCCGTATTGGACTTTGGGGACGATCTATGGGTGCAGTTACCAG
| ||| || | ||| || || | | | ||||||| | ||| || | || | | | ||||| ||||||||||||| ||||| || || |||| | || ||| ||| |||| ||||| || ||||||||||||||||||||||| ||||| ||
gtaagttatctcattatgcatgtttttatttgtttattaatttctggctattatgttgagtttctgcatattccatcttttctgaaactaccaaaacgtgtccattcctttgtgtggtagAAAGATGATCTCAAGATGGTGGTGTCATATTTGAGGAGCAACAAACAAATATCTCGTATAGGTCTTTGGGGACGATCTATGGGTGCTGTTACTAG
upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA15G12950.1 (Glycine max), 3'ss of exon 3
------------------------------------------------------------------------------------gtgtgttttcgg-gtcttactttctcaaggttcttcgtcttttc------cttatctaaatt--ttttcttcttaaa-----cttaagctagAAGGATGATCTCAAGACTGTGGTATCTTACCTGAGAAACAGCAATCAAGTATCCCGTATTGGACTTTGGGGACGATCTATGGGTGCAGTTACCAG
|| || | | || | || ||| || | |||| || || | | || || || || | | | |||| || || ||||||| ||||| || | | | || || ||| | |||||| | |||||| |||||||||||||| |||||||| ||||| ||
gtaagttacctctttttgcatgtatttatttctttaattagtttccaaaattacatcttatatgcatctaacgaaagtttctttatgaattaacaatgcaacacatctataaagttgtttgcttttttgtgtaattttcctgcaatggttatcaagtttaatgtttcctgtgacagAAAGACGACCTCAAGATGGTGGTGTCACATTTAAAAAGCAACAAACTAGTATCTCATATTGGTCTTTGGGGACGATCAATGGGTGCTGTTACTAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19878908|gb|AU239739.1|AU239739EST: CGGGGTCAGGCTTATCTGAGGGTGATTATGTAAGCCTTGGCTGGCATGAG AAGGATGATCTCAAGACTGTGGTATCTTACCTGAGAAACAGCAATCAAGTA
genomic: CGGGGTCAGGCTTATCTGAGGGTGATTATGTAAGCCTTGGCTGGCATGAGgtgtgttttc ... cttaagctagAAGGATGATCTCAAGACTGTGGTATCTTACCTGAGAAACAGCAATCAAGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaaggttcttcgtcttttccttatctaaattttttcttcttaaacttaagctagAAGGATGATCTCAAGACTGTGGTATCTTACCTGAGAAACAGCAATCAAGTATCCCGTATTGGACTTTGGGGACGATCTATGGGTGCAGTTACCAG
atctaaa putative branch site (score: 3)
ttatctaaattttttc TA-rich tract