Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagcattactttgcctcccataacaataataaactttcaagtccttttgattcttgttgctgaaaaagctgatttgtttctttggaatggttgcagGATTCACAGTATGATTCAGAATCTTGCACAGTTTACTGATATCAAGTGTGGATTGATTGTAGGAGGGCTTTCTGTAAGG

Basic information

species Arabidopsis thaliana
transcript AT4G16630.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164032042|gb|ES136397.1|ES136397
EST:     GAGTTCTTATTCTCACTCCGACTAGGGAGTTGGCCGTCCA                         GATTCACAGTATGATTCAGAATCTTGCACAGTTTACTGATATCAAGTG
genomic: GAGTTCTTATTCTCACTCCGACTAGGGAGTTGGCCGTCCAgtaagtagca ... atggttgcagGATTCACAGTATGATTCAGAATCTTGCACAGTTTACTGATATCAAGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttttgattcttgttgctgaaaaagctgatttgtttctttggaatggttgcagGATTCACAGTATGATTCAGAATCTTGCACAGTTTACTGATATCAAGTGTGGATTGATTGTAGGAGGGCTTTCTGTAAGG
                         agctgat  putative branch site (score: 4)
                              atttgttt  TA-rich tract