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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtctctcattcctatcttaatctctgcccaaagatgaaggagtttttctttttaattcttgtgatctcttaataacagGTCCGTCCAGCACTCCCAGCCCTTGAACGCCTGATTCATTCGACTGATGAGGAAGTGTTAACGGATGCATGTTGGGCTCTCTCTTACCTTTCCGATGGCA

Basic information

species Arabidopsis thaliana
transcript AT4G16143.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124996443|gb|EL068712.1|EL068712
EST:     GGA-CCTCTCTAATTTCTGCAGGGGCAAGCCACAGCCTCCCTTTGACCAG                         GTCCGTCCAGCACTCCCAGCCCTTGAACGCCTGATTCATTCGACTGATG
genomic: GGACCCTCTCTAATTTCTGCAGGGGCAAGCCACAGCCTCCCTTTGACCAGgtttgtctct ... ttaataacagGTCCGTCCAGCACTCCCAGCCCTTGAACGCCTGATTCATTCGACTGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcccaaagatgaaggagtttttctttttaattcttgtgatctcttaataacagGTCCGTCCAGCACTCCCAGCCCTTGAACGCCTGATTCATTCGACTGATGAGGAAGTGTTAACGGATGCATGTTGGGCTCTCTCTTACCTTTCCGATGGCA
                                           tcttaat  putative branch site (score: 3)
                                         tctctt  CT-rich tract
                   tttttctttttaattc  TA-rich tract