1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccatgaatggcagtgagtaaccaagacaagctgtggccttcttatacgttgatgaatcctctggcacttaaatctgtctttctttaattatttttttcagCTGGTAAGCGATTCTGGTTATAATTTTAAAGCTGTCAGGAGATGGACTACGCAGAGAAAGTTGGGATATGCTCTTATTGACTGTGACATG
species | Arabidopsis thaliana |
transcript | AT4G15880.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
acgttgatgaatcctctggcacttaaatctgtctttctttaattatttttttcagCTGGTAAGCGATTCTGGTTATAATTTTAAAGCTGTCAGGAGATGGACTACGCAGAGAAAGTTGGGATATGCTCTTATTGACTGTGACATG
ctttaat putative branch site (score: 4)
tctttctttaattatt CT-rich tract
ttaaatctgtctttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatgaatggcagtgagtaaccaagacaagctgtggccttcttatacgttgatgaatcctctggcacttaaatctgtctttctttaattatttttttcagCTGGTAAGCGATTCTGGTTATAATTTTAAAGCTGTCAGGAGATGGACTACGCAGAGAAAGTTGGGATATGCTCTTATTGACTGTGACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
ccatgaa
- - - - - - - - - aaccaag
- - - - - - - - - - - - -acaagct
- - - - - - - - - - - - - - - - - - - - - - - - - - tgaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttaaa