Sequence
atgc intronic sequence ATGC exonic sequencegtaatgaaactttgctacctgttgatgttttttactctatgacaaaaccatttccccatagctgaaacttgttgaactgtcttcatcttagGTACTGGTAAGAAACATTCCTGCAGATCCTCATGAATCAATATGTGAACTTGTTGAACATTTCTTCAAAGTCAATCATCCAGATCACTATCTCACTTTCC
Basic information
species | Arabidopsis thaliana |
transcript | AT4G15430.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G15430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G456000_T01 (Zea mays), 3'ss of exon 4
---gtaatgaaactttg-ctacctgttgatgttttttactcta---tgacaaaaccatttccccatagctgaaacttgttgaactgtc--ttcatcttagGTACTGGTAAGAAACATTCCTGCAGATCCTCATGAATCAATATGTGAACTTGTTGAACATTTCTTCAAAGTCAATCATCCAGATCACTATCTCACTTTCC
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aatatcttcatatcaggactaactttacatagctgtcatgataagttgatgcacctttagttcgcaaattctaagttactaatttgccaatgtgttttagGTCCTTGTGCGGAATATACCACCAGATCCTGATGAATCAATCAGTGAGCTTGTGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTACAACACC
upper sequence: AT4G15430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G43910.2 (Glycine max), 3'ss of exon 4
gtaatgaaactttgctacctgttgatg-----ttttttactctatgacaaaac---catttccccatagctgaaacttgttg-aactgtcttcatcttagGTACTGGTAAGAAACATTCCTGCAGATCCTCATGAATCAATATGTGAACTTGTTGAACATTTCTTCAAAGTCAATCATCCAGATCACTATCTCACTTTCC
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accttcctacctttaaaaatatagaggaaaaacttttgacaataaactttatcttgtgtttccccatgcttgctccttcatgcaatttacatttgtgcagGTACTTGTTAGAAATGTACCACCTGATCCTGATGAATCGGTCAGTGAGCTAGTGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatgacaaaaccatttccccatagctgaaacttgttgaactgtcttcatcttagGTACTGGTAAGAAACATTCCTGCAGATCCTCATGAATCAATATGTGAACTTGTTGAACATTTCTTCAAAGTCAATCATCCAGATCACTATCTCACTTTCC
tcttcatctt CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatgaaactttgctacctgttgatgttttttactctatgacaaaaccatttccccatagctgaaacttgttgaactgtcttcatcttagGTACTGGTAAGAAACATTCCTGCAGATCCTCATGAATCAATATGTGAACTTGTTGAACATTTCTTCAAAGTCAATCATCCAGATCACTATCTCACTTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA