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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatacaatctgtaaacttgctgttttatctatctagtttggttgttcagtggtttggagtttccggaagcagttttggttgttgatggatgaaaatgtggcagGATCTATCTGGTAGACCATATCTTGGATACAACTTAGAGATTCCAACGCAGAGAGTAGGAACATACGACACTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G14910.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124707955|gb|EH799357.1|EH799357
EST:     TGGCGATTTTACAGCTCCTCTTGATGTAAGCACTCATACATGTTTCCCTG                         GATCTATCTGGTAGACCATA
genomic: TGGCGATTTTACAGCTCCTCTTGATG-AAGCACTCATACATGTTTCCCTGgtatgataca ... aatgtggcagGATCTATCTGGTAGACCATA
EST: gi|86058153|gb|DR353910.1|DR353910
EST:     TTGGCGATTTTACAGCTCCTCTTGATGAAGCACTCATACATGTTTCCCTG                         GATCTATCTGGTAGACCATATCTCGGATACAACTTAGAGATTCCAACTCAG
genomic: TTGGCGATTTTACAGCTCCTCTTGATGAAGCACTCATACATGTTTCCCTGgtatgataca ... aatgtggcagGATCTATCTGGTAGACCATATCTTGGATACAACTTAGAGATTCCAACGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtttggagtttccggaagcagttttggttgttgatggatgaaaatgtggcagGATCTATCTGGTAGACCATATCTTGGATACAACTTAGAGATTCCAACGCAGAGAGTAGGAACATACGACACTCAG
                               tgttgat  putative branch site (score: 4)
                                        atgaaaat  TA-rich tract